of bar-coded 16s rrna gene fragments Search Results


99
New England Biolabs barcode
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90
Oxford Nanopore 16s barcoding kit sqk-rab204
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Oxford Nanopore 16s barcoding kit
16s Barcoding Kit, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Illumina Inc xt index kit
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86
Sangon Biotech 16s rrna amplicons
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Pacific Biosciences full length 16s primers
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Nextera AS sequencing bar-coded adaptors nextera xt index kit v2
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Illumina Inc miseq platform
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Thermo Fisher gene amp r9700 pcr
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Oxford Nanopore 16s barcoding kit sqk-16s114.24
16s Barcoding Kit Sqk 16s114.24, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Illumina Inc hiseq 2500
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90
Oxford Nanopore nanopore - 16s barcoding kit 1-24
Most abundant taxa and their distribution throughout the studies sites. (A) Relative abundances of groups found in environmental samples according to <t>16S</t> sequencing. All taxa found with relative abundances below 2.5% in each sample were labeled as “Others”. (B) Principal component analysis (PCA) of most abundant bacteria, clustered together per sampling site and colored according to land use classification. (C) Correlogram indicating negative (in red) and positive (in blue) correlations among most abundant taxa (minimum relative abundance of 5%) in the studied sites.
Nanopore 16s Barcoding Kit 1 24, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Most abundant taxa and their distribution throughout the studies sites. (A) Relative abundances of groups found in environmental samples according to 16S sequencing. All taxa found with relative abundances below 2.5% in each sample were labeled as “Others”. (B) Principal component analysis (PCA) of most abundant bacteria, clustered together per sampling site and colored according to land use classification. (C) Correlogram indicating negative (in red) and positive (in blue) correlations among most abundant taxa (minimum relative abundance of 5%) in the studied sites.

Journal: bioRxiv

Article Title: Metagenomic insights for antimicrobial resistance surveillance in soils with different land uses in Brazil

doi: 10.1101/2022.12.05.519117

Figure Lengend Snippet: Most abundant taxa and their distribution throughout the studies sites. (A) Relative abundances of groups found in environmental samples according to 16S sequencing. All taxa found with relative abundances below 2.5% in each sample were labeled as “Others”. (B) Principal component analysis (PCA) of most abundant bacteria, clustered together per sampling site and colored according to land use classification. (C) Correlogram indicating negative (in red) and positive (in blue) correlations among most abundant taxa (minimum relative abundance of 5%) in the studied sites.

Article Snippet: Part of the extracted DNA was used for triplicates amplification of 16S rDNA, following Nanopore - 16S Barcoding Kit 1-24 (SQK-16S024, Oxford Nanopore Technologies - ONT) recommendations, adding different barcodes for each replicate.

Techniques: Environmental Sampling, Sequencing, Labeling, Bacteria, Sampling